Okay, first. If there is no air filter in front of the maf, that may well be your problem. The air flow may not be smooth enuf for the maf to meter properly. This is speculation on my part, but I have seen strange things when the air flow is not right.
With regard to the turbo, it should not have any effect on how it idles or transitions if there is no boost.
The tps settings do not matter whether they are .36 or .46 as long as they are within that window. The computer sets the idle speed and controls it. If you screw in on the iac, it may increase the idle speed, but, when you shut the engine off and then restart it, the idle will go back to wherever the ecm commands.
If you screw the iac screw inward, the tps voltage will rise but as I said above, the idle will go back to what the ecm commands when you reset it. If you screw the iac screw in far enuf, the Iac numbers will approach zero and as they get there, the iac no longer works as an iac and the screw becomes an idle adjustment screw and the computer will lose control of the situation. Altho we all talk about magic Iac numbers, I really have seen virtually no difference between iac readings of 20 and iac readings of 40 with modern chips. The iac keeps doing its job.
Of course, we are talking about iac numbers that are taken in Park on a warmed up engine. When in drive, the numbers should go up quite a bit as the iac is more active trying to maintain a constant idle speed as it has to adapt to the load on the engine which causes the idle speed to want to vary more.
I generally try to set mine in Park/warmed up to be around 30 but as I said, it really does not seem to be sensitive to a given number. As long as it goes up in Drive, it would seem to be working. Obviously it is idle air control and has zero effect once you mash on the gas pedal a little.